SHG78874.1 protein (Chryseobacterium arachidis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SHG78874.1

Por secretion system C-terminal sorting domain-containing protein. (597 aa)

Predicted Functional Partners:

SHF77066.1

0.664

SHF81289.1

0.499

SHG78827.1

0.478

SHF83744.1

0.470

SHG02787.1

0.422

Your Current Organism:

Chryseobacterium arachidis

NCBI taxonomy Id: 1416778
Other names: C. arachidis, CCM 8489, Chryseobacterium sp. 91A-593, DSM 27619, LMG 27813, LMG:27813, strain 91A-593

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHF77066.1	SHF81289.1	SAMN05443633_106177	SAMN05443633_10718	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.708
SHF77066.1	SHG02787.1	SAMN05443633_106177	SAMN05443633_109124	Por secretion system C-terminal sorting domain-containing protein.	DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.	0.487
SHF77066.1	SHG78874.1	SAMN05443633_106177	SAMN05443633_12315	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.664
SHF81289.1	SHF77066.1	SAMN05443633_10718	SAMN05443633_106177	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.708
SHF81289.1	SHG78874.1	SAMN05443633_10718	SAMN05443633_12315	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.499
SHF83744.1	SHG78874.1	SAMN05443633_10790	SAMN05443633_12315	Archaemetzincin.	Por secretion system C-terminal sorting domain-containing protein.	0.470
SHG02787.1	SHF77066.1	SAMN05443633_109124	SAMN05443633_106177	DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.	Por secretion system C-terminal sorting domain-containing protein.	0.487
SHG02787.1	SHG78874.1	SAMN05443633_109124	SAMN05443633_12315	DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.	Por secretion system C-terminal sorting domain-containing protein.	0.422
SHG78827.1	SHG78874.1	SAMN05443633_12314	SAMN05443633_12315	ATP-dependent Clp protease ATP-binding subunit ClpC; Belongs to the ClpA/ClpB family.	Por secretion system C-terminal sorting domain-containing protein.	0.478
SHG78874.1	SHF77066.1	SAMN05443633_12315	SAMN05443633_106177	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.664
SHG78874.1	SHF81289.1	SAMN05443633_12315	SAMN05443633_10718	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.499
SHG78874.1	SHF83744.1	SAMN05443633_12315	SAMN05443633_10790	Por secretion system C-terminal sorting domain-containing protein.	Archaemetzincin.	0.470
SHG78874.1	SHG02787.1	SAMN05443633_12315	SAMN05443633_109124	Por secretion system C-terminal sorting domain-containing protein.	DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.	0.422
SHG78874.1	SHG78827.1	SAMN05443633_12315	SAMN05443633_12314	Por secretion system C-terminal sorting domain-containing protein.	ATP-dependent Clp protease ATP-binding subunit ClpC; Belongs to the ClpA/ClpB family.	0.478