STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI74363.1DinB superfamily protein. (180 aa)    
Predicted Functional Partners:
SEI74322.1
Maltose O-acetyltransferase.
       0.773
SEJ05768.1
Tat (twin-arginine translocation) pathway signal sequence.
  
     0.650
SEJ36247.1
Hypothetical protein.
  
     0.612
SEI84374.1
Lipid A 3-O-deacylase (PagL).
  
     0.575
SEJ51605.1
3',5'-cyclic AMP phosphodiesterase CpdA.
  
     0.569
SEI74376.1
DNA polymerase-3 subunit epsilon.
       0.512
SEJ61336.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.501
SEJ33082.1
Hypothetical protein.
  
     0.498
SEJ65646.1
Hypothetical protein.
  
     0.486
SEJ15229.1
Hypothetical protein.
  
     0.477
Your Current Organism:
Cyclobacterium halophilum
NCBI taxonomy Id: 1416801
Other names: C. halophilum, CECT 8341, Cyclobacterium halophilum Shahinpei et al. 2014, Cyclobacterium sp. GASx41, Cyclobacterium sp. IBRC-M 10761, IBRC-M 10761, strain GASx41
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.