STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ06861.1Ig-like domain-containing protein. (583 aa)    
Predicted Functional Partners:
mnmG
tRNA uridine 5-carboxymethylaminomethyl modification enzyme; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
       0.793
SEJ06870.1
Methyltransferase domain-containing protein.
       0.785
SEJ39072.1
Hypothetical protein.
  
     0.759
SEJ32314.1
Long-chain fatty acid transport protein.
  
    0.755
ybeY
rRNA maturation RNase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
 
     0.740
SEJ49267.1
Protein of unknown function.
  
     0.722
SEJ34384.1
ABC-type branched-chain amino acid transport system, substrate-binding protein.
  
     0.703
SEJ06976.1
Serine/threonine-protein kinase RsbW.
       0.699
SEJ03967.1
Beta-barrel assembly machine subunit BamA.
  
     0.699
SEJ20026.1
Beta-barrel assembly machine subunit BamD.
  
     0.698
Your Current Organism:
Cyclobacterium halophilum
NCBI taxonomy Id: 1416801
Other names: C. halophilum, CECT 8341, Cyclobacterium halophilum Shahinpei et al. 2014, Cyclobacterium sp. GASx41, Cyclobacterium sp. IBRC-M 10761, IBRC-M 10761, strain GASx41
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.