STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsmI16S rRNA (cytidine1402-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (227 aa)    
Predicted Functional Partners:
SEJ32432.1
4a-hydroxytetrahydrobiopterin dehydratase.
       0.793
SEJ32462.1
Myo-inositol-1(or 4)-monophosphatase.
       0.785
SEJ32408.1
Hypothetical protein.
       0.768
SEJ32399.1
Peptidyl-prolyl cis-trans isomerase D.
       0.529
SEJ05326.1
tRNA1Val (adenine37-N6)-methyltransferase; Belongs to the methyltransferase superfamily.
 
    0.512
tadA
tRNA(adenine34) deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
      0.508
rpsQ
Small subunit ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
   
 0.498
rnhB
RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
 
     0.473
SEJ78728.1
16S rRNA (uracil1498-N3)-methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
 
   
 0.432
SEJ13382.1
Ribosomal protein L11 methyltransferase.
 
  
 0.431
Your Current Organism:
Cyclobacterium halophilum
NCBI taxonomy Id: 1416801
Other names: C. halophilum, CECT 8341, Cyclobacterium halophilum Shahinpei et al. 2014, Cyclobacterium sp. GASx41, Cyclobacterium sp. IBRC-M 10761, IBRC-M 10761, strain GASx41
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.