STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KTR83658.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (523 aa)    
Predicted Functional Partners:
KTR83169.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.891
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.883
KTR84994.1
PA-phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.766
KTR83981.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.766
KTR83738.1
Phosphatidic acid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.766
KTR83592.1
Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.757
KTR83596.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.757
KTR83657.1
Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.757
KTR83641.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.757
KTR83652.1
Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.757
Your Current Organism:
Novosphingobium barchaimii
NCBI taxonomy Id: 1420591
Other names: CCM 7980, DSM 25411, N. barchaimii, Novosphingobium barchaimii Niharika et al. 2013, strain LL02
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.