STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OQK16474.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)    
Predicted Functional Partners:
OQK16059.1
Restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.895
OQK17258.1
DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.847
OQK17259.1
DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.838
OQK16056.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.838
OQK17370.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.776
OQK17261.1
DEAD/DEAH box helicase; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
     0.758
OQK16472.1
Antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.697
vapC
Plasmid maintenance protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
       0.697
OQK17271.1
DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.550
OQK17955.1
Restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.550
Your Current Organism:
Methyloprofundus sedimenti
NCBI taxonomy Id: 1420851
Other names: ATCC BAA-2619, LMG 28393, LMG:28393, M. sedimenti, Methylococcaceae bacterium WF1, Methyloprofundus sedimenti Tavormina et al. 2015, strain WF1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.