STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OQK16837.1Dynamin family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (646 aa)    
Predicted Functional Partners:
OQK17716.1
GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.702
OQK17987.1
Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.699
OQK18359.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.699
OQK17617.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.662
OQK15685.1
Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.622
trmB
tRNA (guanine-N7)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
       0.562
OQK15286.1
Pilus assembly protein PilM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.559
OQK18476.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.537
thiG
Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
       0.515
ubiC
Chorismate--pyruvate lyase; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family.
  
     0.508
Your Current Organism:
Methyloprofundus sedimenti
NCBI taxonomy Id: 1420851
Other names: ATCC BAA-2619, LMG 28393, LMG:28393, M. sedimenti, Methylococcaceae bacterium WF1, Methyloprofundus sedimenti Tavormina et al. 2015, strain WF1
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