STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OQK18773.1Sulfate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (549 aa)    
Predicted Functional Partners:
OQK17772.1
Carbonic anhydrase; Macrophage inducible 5; Mig-5; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
  0.792
OQK18595.1
Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.672
OQK18599.1
Hydantoin racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.658
OQK18596.1
Hydrogenase 4 subunit F; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.655
OQK18597.1
Formate hydrogenlyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.655
OQK18598.1
Formate hydrogenlyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.655
OQK18594.1
Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.654
OQK17111.1
Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
   0.635
OQK18230.1
Integrase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 
  0.592
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
   0.502
Your Current Organism:
Methyloprofundus sedimenti
NCBI taxonomy Id: 1420851
Other names: ATCC BAA-2619, LMG 28393, LMG:28393, M. sedimenti, Methylococcaceae bacterium WF1, Methyloprofundus sedimenti Tavormina et al. 2015, strain WF1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.