STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OQK16242.1Prevent-host-death protein; Antitoxin component of a type II toxin-antitoxin (TA) system. (79 aa)    
Predicted Functional Partners:
OQK16243.1
Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.788
OQK16241.1
isovaleryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.580
OQK16244.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.507
OQK16331.1
Phenylalanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.499
vapC
Plasmid maintenance protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
   
   0.408
OQK17372.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.408
OQK18436.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.408
OQK15395.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.408
Your Current Organism:
Methyloprofundus sedimenti
NCBI taxonomy Id: 1420851
Other names: ATCC BAA-2619, LMG 28393, LMG:28393, M. sedimenti, Methylococcaceae bacterium WF1, Methyloprofundus sedimenti Tavormina et al. 2015, strain WF1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.