STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V493_04980F-box domain-containing protein. (395 aa)    
Predicted Functional Partners:
V493_03104
Uncharacterized protein.
   
 
 0.984
V493_03211
RRM domain-containing protein.
   
 
 0.980
V493_08666
Uncharacterized protein.
   
 
 0.978
V493_02538
Brix domain-containing protein.
   
 
 0.978
V493_05033
60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.
   
 
 0.977
V493_01853
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.976
V493_06018
Uncharacterized protein.
   
 
 0.974
YTM1
Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 
 0.974
V493_08238
Uncharacterized protein.
   
 
 0.973
V493_05034
Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family.
   
 
 0.972
Your Current Organism:
Pseudogymnoascus sp. VKMF4281
NCBI taxonomy Id: 1420906
Other names: P. sp. VKM F-4281 (FW-2241), Pseudogymnoascus sp. VKM F-4281 (FW-2241)
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