STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V493_00388Fip1 domain-containing protein. (334 aa)    
Predicted Functional Partners:
V493_08428
DUF3453 domain-containing protein.
    
 0.999
V493_02222
Uncharacterized protein.
   
 0.999
V493_07896
Uncharacterized protein.
    
 0.998
V493_07667
YTH domain-containing protein.
    
 0.998
V493_03207
Uncharacterized protein.
   
 0.998
V493_05408
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.998
V493_05502
Uncharacterized protein.
    
 0.998
V493_05529
NDT80 domain-containing protein.
   
 0.997
V493_03819
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
   
 0.997
V493_03464
WD_REPEATS_REGION domain-containing protein.
   
 0.995
Your Current Organism:
Pseudogymnoascus sp. VKMF4281
NCBI taxonomy Id: 1420906
Other names: P. sp. VKM F-4281 (FW-2241), Pseudogymnoascus sp. VKM F-4281 (FW-2241)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.