STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V500_07717Ubiquitin carboxyl-terminal hydrolase. (312 aa)    
Predicted Functional Partners:
V500_09850
VWFA domain-containing protein.
    
 0.994
V500_09683
MPN domain-containing protein.
   
 0.976
V500_09341
CSN8_PSD8_EIF3K domain-containing protein.
   
 0.976
V500_07055
Proteasome subunit alpha type.
   
 0.970
V500_01613
RPN13_C domain-containing protein.
   
 0.970
V500_08626
MPN domain-containing protein.
   
 0.969
V500_08278
PCI domain-containing protein.
   
 0.969
V500_08049
AAA domain-containing protein; Belongs to the AAA ATPase family.
   
 0.967
V500_06380
Proteasome subunit beta.
   
 0.967
V500_09479
PCI domain-containing protein.
   
 0.967
Your Current Organism:
Pseudogymnoascus sp. VKMF4518
NCBI taxonomy Id: 1420913
Other names: P. sp. VKM F-4518 (FW-2643), Pseudogymnoascus sp. VKM F-4518 (FW-2643)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.