STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHI30547.1LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)    
Predicted Functional Partners:
barA-2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.869
rcsC-2
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.856
AHI33469.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.827
nreB
Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.749
devR
NarL family two-protein response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.738
srrB
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.575
luxQ
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.528
todS
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.423
AHI32061.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.414
rcsC
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.412
Your Current Organism:
Marinobacter salarius
NCBI taxonomy Id: 1420917
Other names: CIP 110588, JCM 19399, KMM 7502, LMG 27497, LMG:27497, M. salarius, Marinobacter salarius Ng et al. 2015, Marinobacter sp. JCM 19399, Marinobacter sp. R9SW1, strain R9SW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.