STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfhFEpimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (302 aa)    
Predicted Functional Partners:
ANA46532.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.714
ydaG
General stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.710
recX
Recombinase RecA; Modulates RecA activity; Belongs to the RecX family.
     
 0.629
ANA46531.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.622
yfhH
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.617
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
      
 0.616
dapdh
Diaminopimelate dehydrogenase; Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate. Probably plays a role in lysine biosynthesis. Exhibits a high substrate specificity, since alpha-ketoglutarate, pyruvate, oxaloacetate, glyoxylate, alpha-ketobutyrate, alpha-ketovalerate, alpha-ketocaproate, alpha-ketoisocaproate, alpha-ketoisovalerate, and phenylpyruvate are not substrates for the reductive amination reaction, and L,L-2,6-diaminopimelate, D,D-2,6-d [...]
      
 0.615
dtpT
Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.606
ANA47115.1
PhnB protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.604
pdaA
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.598
Your Current Organism:
Lysinibacillus sphaericus
NCBI taxonomy Id: 1421
Other names: ATCC 14577, B-23268, BCRC 12825, Bacillus sp. G10(2009), Bacillus sphaericus, CCM 2120, CCRC 12825, CCRC:12825, CCUG 7428, CIP 65.30, DSM 28, IAM 13420, JCM 2502, KCTC 3346, L. sphaericus, LMG 7134, LMG:7134, NBRC 15095, NCCB 75018, NCIMB 9370, NCTC 10338, NRRL B-23268, VKM B-509
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