STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdaAPolysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)    
Predicted Functional Partners:
rlmCD
23S rRNA (uracil-5-)-methyltransferase RumA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.669
ANA46237.1
Chitin deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.654
icaA_1
Hyaluronan synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.624
yfhF
Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.598
ANA48222.1
Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.549
secA_2
Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.
     
 0.462
recX
Recombinase RecA; Modulates RecA activity; Belongs to the RecX family.
     
 0.458
yfjS
Chitin deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
0.426
YfhJ
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.417
yfhH
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.417
Your Current Organism:
Lysinibacillus sphaericus
NCBI taxonomy Id: 1421
Other names: ATCC 14577, B-23268, BCRC 12825, Bacillus sp. G10(2009), Bacillus sphaericus, CCM 2120, CCRC 12825, CCRC:12825, CCUG 7428, CIP 65.30, DSM 28, IAM 13420, JCM 2502, KCTC 3346, L. sphaericus, LMG 7134, LMG:7134, NBRC 15095, NCCB 75018, NCIMB 9370, NCTC 10338, NRRL B-23268, VKM B-509
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