V565_045280 protein (Rhizoctonia solani 123E)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V565_045280

E3 ubiquitin ligase complex SCF subunit SconC protein; Belongs to the SKP1 family. (242 aa)

Predicted Functional Partners:

V565_045500

0.969

V565_006280

0.966

V565_143600

0.965

V565_089350

0.961

V565_204670

0.954

V565_056230

0.954

V565_004320

0.954

V565_148030

0.952

V565_031980

0.951

V565_010960

0.951

Your Current Organism:

Rhizoctonia solani 123E

NCBI taxonomy Id: 1423351
Other names: R. solani 123E

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V565_004320	V565_045280	A0A074SCX2	A0A074RZK8	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	E3 ubiquitin ligase complex SCF subunit SconC protein; Belongs to the SKP1 family.	0.954
V565_004320	V565_045500	A0A074SCX2	A0A074S4C8	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	RING-box protein.	0.937
V565_006280	V565_010960	A0A074SCD7	A0A074SYI2	F-box/WD repeat protein pof1.	F-box/WD repeat protein 1A.	0.719
V565_006280	V565_031980	A0A074SCD7	A0A074S8X4	F-box/WD repeat protein pof1.	Putative F-box and WD40 domain protein.	0.817
V565_006280	V565_045280	A0A074SCD7	A0A074RZK8	F-box/WD repeat protein pof1.	E3 ubiquitin ligase complex SCF subunit SconC protein; Belongs to the SKP1 family.	0.966
V565_006280	V565_045500	A0A074SCD7	A0A074S4C8	F-box/WD repeat protein pof1.	RING-box protein.	0.957
V565_006280	V565_056230	A0A074SCD7	A0A074RXF6	F-box/WD repeat protein pof1.	Ubiquitin-protein ligase.	0.721
V565_006280	V565_143600	A0A074SCD7	A0A074RT27	F-box/WD repeat protein pof1.	SCF E3 ubiquitin ligase complex F-box protein grrA.	0.835
V565_006280	V565_204670	A0A074SCD7	A0A074RLX9	F-box/WD repeat protein pof1.	WD domain, G-beta repeat protein.	0.732
V565_010960	V565_006280	A0A074SYI2	A0A074SCD7	F-box/WD repeat protein 1A.	F-box/WD repeat protein pof1.	0.719
V565_010960	V565_045280	A0A074SYI2	A0A074RZK8	F-box/WD repeat protein 1A.	E3 ubiquitin ligase complex SCF subunit SconC protein; Belongs to the SKP1 family.	0.951
V565_010960	V565_045500	A0A074SYI2	A0A074S4C8	F-box/WD repeat protein 1A.	RING-box protein.	0.962
V565_010960	V565_056230	A0A074SYI2	A0A074RXF6	F-box/WD repeat protein 1A.	Ubiquitin-protein ligase.	0.672
V565_010960	V565_143600	A0A074SYI2	A0A074RT27	F-box/WD repeat protein 1A.	SCF E3 ubiquitin ligase complex F-box protein grrA.	0.695
V565_010960	V565_148030	A0A074SYI2	A0A074RSK5	F-box/WD repeat protein 1A.	F-box and WD repeat protein.	0.516
V565_010960	V565_204670	A0A074SYI2	A0A074RLX9	F-box/WD repeat protein 1A.	WD domain, G-beta repeat protein.	0.720
V565_031980	V565_006280	A0A074S8X4	A0A074SCD7	Putative F-box and WD40 domain protein.	F-box/WD repeat protein pof1.	0.817
V565_031980	V565_045280	A0A074S8X4	A0A074RZK8	Putative F-box and WD40 domain protein.	E3 ubiquitin ligase complex SCF subunit SconC protein; Belongs to the SKP1 family.	0.951
V565_031980	V565_045500	A0A074S8X4	A0A074S4C8	Putative F-box and WD40 domain protein.	RING-box protein.	0.962
V565_031980	V565_056230	A0A074S8X4	A0A074RXF6	Putative F-box and WD40 domain protein.	Ubiquitin-protein ligase.	0.760