STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK94776.1DNA uptake protein related DNA-binding protein. (234 aa)    
Predicted Functional Partners:
KRK94774.1
Metallo-beta-lactamase superfamily hydrolase.
 
  
 0.879
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
      0.872
KRK94777.1
Lon-like protease.
      0.848
KRK94775.1
Deoxycytidylate deaminase.
  
    0.788
KRK96424.1
Superfamily II DNA RNA helicase.
   
  
 0.738
KRK94773.1
DNA polymerase III subunit delta.
       0.704
KRK93710.1
Type II secretory pathway competence component.
  
  
 0.700
KRK93711.1
Type II secretory pathway competence component, ATPase.
  
  
 0.679
KRK94781.1
Cell division membrane protein; Belongs to the SEDS family.
  
    0.646
KRK93859.1
Hypothetical protein.
   
  
 0.639
Your Current Organism:
Lactobacillus acidifarinae
NCBI taxonomy Id: 1423715
Other names: L. acidifarinae DSM 19394, Lactobacillus acidifarinae DSM 19394
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.