STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK94100.1Hypothetical protein. (208 aa)    
Predicted Functional Partners:
KRK95388.1
Diguanylate cyclase.
  
 
 0.919
KRK95225.1
Two-component response regulator.
  
  
 
0.883
KRK94436.1
Histidine protein kinase.
  
 0.626
KRK94081.1
Sensor kinase protein.
  
 0.626
KRK96322.1
Signal transduction histidine kinase.
  
 0.626
KRK96210.1
Signal transduction histidine kinase.
  
 0.626
KRK96242.1
Signal transduction histidine kinase.
  
 0.626
KRK94808.1
TPR repeat-containing protein.
    
 0.618
KRK95353.1
Hypothetical protein.
    
 0.618
KRK96448.1
Cellulose synthase catalytic subunit.
    
 0.618
Your Current Organism:
Lactobacillus acidifarinae
NCBI taxonomy Id: 1423715
Other names: L. acidifarinae DSM 19394, Lactobacillus acidifarinae DSM 19394
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.