STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK95223.1DNA-binding helix-turn-helix protein. (310 aa)    
Predicted Functional Partners:
KRK95222.1
N-6 adenine-specific DNA methylase YitW.
 
     0.783
KRK95224.1
Hypothetical protein.
       0.723
cinA
Competence damage-inducible protein A; Belongs to the CinA family.
    
 0.722
KRK95225.1
Two-component response regulator.
  
 0.603
KRK95218.1
ABC transporter component.
 
     0.594
KRK94487.1
ATPase.
    
 
 0.589
KRK95220.1
NifU-like protein.
 
     0.589
KRK95215.1
Ferrous iron transport protein b; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.
 
    0.518
KRK95219.1
Selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
       0.507
KRK95221.1
FeS assembly protein SufB.
       0.507
Your Current Organism:
Lactobacillus acidifarinae
NCBI taxonomy Id: 1423715
Other names: L. acidifarinae DSM 19394, Lactobacillus acidifarinae DSM 19394
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