STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK96178.1Periplasmic glycine betaine choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein). (309 aa)    
Predicted Functional Partners:
KRK96177.1
Glycine betaine carnitine choline ABC transporter, ATP-binding protein.
 
 0.999
KRK96179.1
Glycine betaine carnitine choline ABC transporter, permease.
 
 0.999
KRK96180.1
ABC-type proline glycine betaine transport system, ATPase component.
 0.999
KRK96132.1
ABC-type proline glycine betaine transport system, ATPase component.
 0.996
KRK96133.1
ABC-type proline glycine betaine transport system, permease and substrate binding protein.
 
 
0.987
potA
ABC-type spermidine putrescine transport system, ATPase component; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 
  0.628
KRK96176.1
Hypothetical protein.
       0.497
KRK95550.1
Hypothetical protein.
    
  0.441
KRK94925.1
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
   
    0.400
Your Current Organism:
Lactobacillus acidifarinae
NCBI taxonomy Id: 1423715
Other names: L. acidifarinae DSM 19394, Lactobacillus acidifarinae DSM 19394
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.