STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK77505.1Hypothetical protein. (81 aa)    
Predicted Functional Partners:
KRK77504.1
Ferritin Dps family protein; Belongs to the Dps family.
 
  
 0.990
KRK77506.1
Heavy metal translocating P-type ATPase.
 
 
 0.981
KRK77503.1
Transcription regulator.
 
  
 0.953
KRK74563.1
Heavy metal translocating P-type ATPase.
 
 
 0.820
KRK75823.1
Heavy metal-transporting ATPase.
  
 
 0.791
KRK78369.1
Cation transport ATPase.
  
 
 0.791
KRK78010.1
P-ATPase superfamily P-type ATPase copper transporter.
  
 
 0.791
KRK77809.1
Hypothetical protein.
 
  
 0.664
KRK78368.1
Transcriptional regulator.
  
  
 0.619
KRK78095.1
Negative regulator of copper transport operon, AtkY.
  
  
 0.619
Your Current Organism:
Lactobacillus alimentarius
NCBI taxonomy Id: 1423720
Other names: L. alimentarius DSM 20249, Lactobacillus alimentarius DSM 20249
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.