STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK76943.1Hypothetical protein. (204 aa)    
Predicted Functional Partners:
KRK76944.1
Hypothetical protein.
       0.809
KRK76945.1
trsC protein.
       0.754
KRK76946.1
Hypothetical protein.
       0.754
KRK76947.1
trsE protein.
       0.737
KRK76948.1
trsF protein.
       0.544
KRK76949.1
Hypothetical protein.
       0.518
KRK76950.1
Hypothetical protein.
       0.470
KRK76952.1
Conjugation protein.
       0.458
KRK76951.1
Hypothetical protein.
       0.454
KRK76953.1
Hypothetical protein.
       0.432
Your Current Organism:
Lactobacillus alimentarius
NCBI taxonomy Id: 1423720
Other names: L. alimentarius DSM 20249, Lactobacillus alimentarius DSM 20249
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.