STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK77932.1Transcriptional regulator. (147 aa)    
Predicted Functional Partners:
KRK77931.1
Alcohol dehydrogenase zinc-binding domain-containing protein.
 
     0.929
KRK75292.1
Site-specific tyrosine recombinase XerS; Belongs to the 'phage' integrase family.
  
  
 0.634
KRK74801.1
Hypothetical protein.
  
   
 0.574
KRK75443.1
Glycopeptide antibiotics resistance protein.
  
   
 0.564
KRK75019.1
ABC proline glycine betaine transporter, permease and substrate binding protein.
  
  
 0.538
KRK75296.1
Transcriptional regulator, tetR family protein.
  
   
 0.537
KRK77954.1
Hypothetical protein.
  
     0.524
KRK77606.1
NAD-dependent epimerase dehydratase.
  
   
 0.502
KRK77930.1
Hypothetical protein.
     
 0.482
KRK77715.1
RNA polymerase sigma factor.
  
  
 0.473
Your Current Organism:
Lactobacillus alimentarius
NCBI taxonomy Id: 1423720
Other names: L. alimentarius DSM 20249, Lactobacillus alimentarius DSM 20249
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.