STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK77938.1Catabolite control protein B. (320 aa)    
Predicted Functional Partners:
KRK76877.1
Ribose operon repressor.
  
     0.769
KRK78346.1
Hypothetical protein.
  
     0.761
KRK77501.1
GntR family transcriptional regulator.
  
   
 0.738
KRK78292.1
LacI family transcription regulator.
  
     0.735
KRK78361.1
Phosphotransferase system, hpr-related protein.
   
 
 0.534
KRK75175.1
Dihydroxyacetone kinase, L subunit.
   
    0.508
KRK75226.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 
 0.499
menG
Ubiquinone menaquinone biosynthesis methyltransferase ubiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).
       0.430
KRK77940.1
Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family.
       0.430
ribA
GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
    
   0.420
Your Current Organism:
Lactobacillus alimentarius
NCBI taxonomy Id: 1423720
Other names: L. alimentarius DSM 20249, Lactobacillus alimentarius DSM 20249
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.