STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK75220.1Hypothetical protein. (106 aa)    
Predicted Functional Partners:
KRK75219.1
Oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.760
KRK75217.1
Hypothetical protein.
  
    0.731
rnz
Beta-lactamase superfamily hydrolase; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
       0.727
obgE
GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.
       0.674
rpmF
Hypothetical protein; Belongs to the bacterial ribosomal protein bL32 family.
       0.542
KRK78273.1
Diguanylate cyclase phosphodiesterase domain 2 containing protein.
  
  
 0.479
KRK78098.1
Diguanylate cyclase phosphodiesterase domain-containing protein.
  
  
 0.479
KRK74800.1
Diguanylate cyclase phosphodiesterase domain 2 containing protein.
  
  
 0.479
KRK78405.1
COMF operon protein 3.
  
  
 0.461
KRK75260.1
DNA processing protein.
   
    0.436
Your Current Organism:
Lactobacillus alimentarius
NCBI taxonomy Id: 1423720
Other names: L. alimentarius DSM 20249, Lactobacillus alimentarius DSM 20249
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.