STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK74597.1Metallo-phosphoesterase. (387 aa)    
Predicted Functional Partners:
polA
DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 0.999
KRK74598.1
Hypothetical protein.
 
 
 0.966
KRK76599.1
Exonuclease SbcC.
  
 0.911
KRK74599.1
Metal-dependent phosphohydrolase.
     
 0.831
KRK74596.1
Hypothetical protein; Belongs to the UPF0342 family.
 
     0.734
KRK75285.1
ATP-dependent DNA helicase RecQ.
  
 0.709
KRK74595.1
Bifunctional glycolsyltransferase transpeptidase penicillin binding protein 2A.
       0.689
dinG
DnaQ family exonuclease DinG family helicase; 3'-5' exonuclease.
  
 0.668
recA
Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 0.566
KRK77859.1
DNA helicase.
   
 0.538
Your Current Organism:
Lactobacillus alimentarius
NCBI taxonomy Id: 1423720
Other names: L. alimentarius DSM 20249, Lactobacillus alimentarius DSM 20249
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.