STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK74637.1OmpR family DNA-binding response regulator. (228 aa)    
Predicted Functional Partners:
KRK74638.1
Histidine protein kinase.
 
 0.981
KRK74576.1
Integral membrane sensor signal transduction histidine kinase.
 
 0.919
KRK78080.1
Two-component system, sensor histidine kinase.
 
 0.914
KRK75687.1
Histidine protein kinase.
 
 0.894
KRK78372.1
Sensor histidine kinase.
 
 0.871
KRK77988.1
Two-component system, sensor histidine kinase.
 
 0.870
KRK78410.1
Two component sensor transduction histidine kinase.
 
 0.847
KRK77592.1
Histidine protein kinase.
 
 0.789
KRK75441.1
Two component sensor transduction histidine kinase.
 
 
 0.779
KRK74636.1
6-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
     
 0.557
Your Current Organism:
Lactobacillus alimentarius
NCBI taxonomy Id: 1423720
Other names: L. alimentarius DSM 20249, Lactobacillus alimentarius DSM 20249
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