STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRL83793.1Hypothetical protein. (346 aa)    
Predicted Functional Partners:
KRL83794.1
ATP-dependent DNA helicase.
 
 
 0.953
KRL85367.1
ATP-dependent DNA helicase RecQ.
  
 
 0.752
KRL83840.1
TPR repeat-containing protein.
 
     0.711
KRL83787.1
Hypothetical protein.
 
     0.659
KRL83795.1
Hypothetical protein.
 
     0.657
KRL86588.1
Hypothetical protein.
  
     0.643
KRL83537.1
Competence protein transcription factor.
  
     0.587
cmk
Cytidylate kinase.
       0.576
KRL83324.1
IpaB EvcA family protein.
  
     0.571
KRL83504.1
Hypothetical protein.
  
     0.566
Your Current Organism:
Lactobacillus apodemi
NCBI taxonomy Id: 1423724
Other names: L. apodemi DSM 16634 = JCM 16172, Lactobacillus apodemi DSM 16634, Lactobacillus apodemi DSM 16634 = JCM 16172, Lactobacillus apodemi JCM 16172, Lactobacillus apodemi JCM 16172 = DSM 16634
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.