STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK40571.1Universal stress protein UspA. (136 aa)    
Predicted Functional Partners:
KRK40572.1
Amino acid transporter.
  
    0.694
KRK40573.1
Amino acid transporter.
  
    0.638
KRK39783.1
Hypothetical protein.
  
     0.623
KRK41006.1
Adenine-specific DNA methyltransferase.
  
     0.551
KRK34309.1
Hypothetical protein; Belongs to the UPF0398 family.
  
     0.440
KRK39050.1
Sulfatase family protein.
  
    0.417
Your Current Organism:
Lactobacillus bifermentans
NCBI taxonomy Id: 1423726
Other names: L. bifermentans DSM 20003, Lactobacillus bifermentans DSM 20003
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