STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK35107.1Antimicrobial peptide ABC transporter permease. (867 aa)    
Predicted Functional Partners:
KRK35108.1
ABC transporter ATPase.
 
  0.989
KRK33403.1
Peptide ABC transporter ATPase.
 
 0.960
KRK35396.1
Peptide ABC transporter ATP-binding protein.
 
  0.809
KRK35106.1
Hypothetical protein.
 
     0.804
KRK40624.1
ABC superfamily ATP binding cassette transporter, ABC protein.
 
  0.803
KRK40078.1
Abc transporter, atp-binding protein.
  
  0.792
KRK40129.1
ABC transporter related protein.
  
  0.773
KRK32750.1
Hypothetical protein.
  
  0.773
KRK39474.1
Peptide ABC transporter ATPase.
  
  0.773
KRK35109.1
TetR family transcriptional regulator.
       0.542
Your Current Organism:
Lactobacillus bifermentans
NCBI taxonomy Id: 1423726
Other names: L. bifermentans DSM 20003, Lactobacillus bifermentans DSM 20003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.