STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK40312.1Response regulator. (219 aa)    
Predicted Functional Partners:
KRK40877.1
Two-component system, sensor histidine kinase.
 0.984
KRK40313.1
Histidine protein kinase.
 0.983
KRK40508.1
Histidine protein kinase.
 
 0.911
KRK39473.1
Signal transduction histidine kinase.
 0.906
KRK40314.1
Hypothetical protein.
 
 0.863
KRK40311.1
Hypothetical protein.
       0.742
KRK40309.1
Trans-hexaprenyltranstransferase, component II; Belongs to the FPP/GGPP synthase family.
       0.741
KRK40310.1
Hypothetical protein.
       0.741
KRK40316.1
Hypothetical protein.
 
    0.657
KRK32972.1
Signal transduction diguanylate cyclase.
  
 
 0.549
Your Current Organism:
Lactobacillus bifermentans
NCBI taxonomy Id: 1423726
Other names: L. bifermentans DSM 20003, Lactobacillus bifermentans DSM 20003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.