STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK40082.1Hypothetical protein. (190 aa)    
Predicted Functional Partners:
KRK40081.1
Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
 
 
 0.991
KRK40083.1
Hypothetical protein.
 
    0.985
KRK40084.1
NADH dehydrogenase.
     0.965
KRK40309.1
Trans-hexaprenyltranstransferase, component II; Belongs to the FPP/GGPP synthase family.
 
 
 0.936
KRK40021.1
NADH dehydrogenase.
     0.908
KRK40764.1
Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
 0.903
KRK34200.1
Thiamine biosynthesis lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
   
 0.793
KRK40022.1
Prenyltransferase.
 
   
 0.792
KRK40298.1
1,4-dihydroxy-2-naphthoate octaprenyltransferase.
 
   
 0.673
KRK39070.1
Putative thiamin biosynthesis ApbE; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
   
 0.653
Your Current Organism:
Lactobacillus bifermentans
NCBI taxonomy Id: 1423726
Other names: L. bifermentans DSM 20003, Lactobacillus bifermentans DSM 20003
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