STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK39947.1Polyamine transport system, permease. (290 aa)    
Predicted Functional Partners:
KRK41010.1
Spermidine putrescine ABC superfamily ATP binding cassette transporter, binding protein.
 
 
 0.991
KRK39948.1
ABC transporter permease.
 
 
 0.976
KRK39949.1
ABC transporter.
 
 0.972
KRK39946.1
Hypothetical protein.
 
  
  0.963
KRK39951.1
Hypothetical protein.
 
     0.939
KRK39945.1
Hypothetical protein.
 
     0.907
KRK39944.1
Glutamate synthase subunit small.
 
     0.886
KRK39950.1
Hypothetical protein.
 
     0.868
KRK34646.1
Sulfate-transporting ATPase; Belongs to the ABC transporter superfamily.
 
 0.860
potA-2
ABC superfamily ATP binding cassette transporter, ABC protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 0.829
Your Current Organism:
Lactobacillus bifermentans
NCBI taxonomy Id: 1423726
Other names: L. bifermentans DSM 20003, Lactobacillus bifermentans DSM 20003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.