STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK39876.1Hypothetical protein. (154 aa)    
Predicted Functional Partners:
KRK39875.1
Hypothetical protein.
 
     0.837
KRK35122.1
Cysteine desulfurase.
  
 
 0.554
KRK40440.1
Cysteine desulfurase.
  
 
 0.554
KRK34196.1
Aminotransferase, class V.
  
 
 0.554
KRK33920.1
Cysteine desulfurase selenocysteine lyase.
  
 
 0.554
KRK38967.1
NifU family protein.
  
  
 0.536
KRK39874.1
Major facilitator superfamily permease.
       0.453
KRK33571.1
Pyruvate flavodoxin ferredoxin oxidoreductase family protein.
  
  
 0.445
ribA
GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
  
   0.436
KRK33325.1
Oxidoreductase.
  
  
 0.426
Your Current Organism:
Lactobacillus bifermentans
NCBI taxonomy Id: 1423726
Other names: L. bifermentans DSM 20003, Lactobacillus bifermentans DSM 20003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.