STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK39452.1Putative transcription regulator (putative). (216 aa)    
Predicted Functional Partners:
KRK39453.1
ABC transporter, permease protein.
 
     0.938
KRK39454.1
ABC superfamily ATP binding cassette transporter, ABC protein.
 
     0.925
KRK39109.1
TetR family transcriptional regulator.
  
     0.530
KRK40151.1
Hypothetical protein.
  
     0.418
KRK39455.1
Drug resistance transporter EmrB QacA subfamily protein; Belongs to the major facilitator superfamily.
       0.412
KRK32600.1
Mucus binding protein.
  
     0.411
Your Current Organism:
Lactobacillus bifermentans
NCBI taxonomy Id: 1423726
Other names: L. bifermentans DSM 20003, Lactobacillus bifermentans DSM 20003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.