STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK40805.1Hypothetical protein. (354 aa)    
Predicted Functional Partners:
KRK40810.1
Phage portal protein, SPP1 Gp6-like.
 
     0.843
KRK40798.1
Hypothetical protein.
 
     0.830
KRK40809.1
Phage Mu protein F like protein.
 
     0.819
KRK40789.1
Hypothetical protein.
 
     0.760
KRK40791.1
Hypothetical protein.
 
     0.744
KRK40806.1
Hypothetical protein.
       0.743
KRK40807.1
Hypothetical protein.
       0.717
KRK40794.1
Hypothetical protein.
 
     0.716
KRK34392.1
Terminase small subunit.
 
     0.679
KRK40804.1
Hypothetical protein.
       0.651
Your Current Organism:
Lactobacillus bifermentans
NCBI taxonomy Id: 1423726
Other names: L. bifermentans DSM 20003, Lactobacillus bifermentans DSM 20003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.