STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK40848.1Hypothetical protein. (129 aa)    
Predicted Functional Partners:
KRK40849.1
Hypothetical protein.
 
     0.942
cinA
Competence damage-inducible protein A; Belongs to the CinA family.
 
  
 0.774
KRK33571.1
Pyruvate flavodoxin ferredoxin oxidoreductase family protein.
  
 
  0.592
KRK34392.1
Terminase small subunit.
  
     0.553
KRK40812.1
Hypothetical protein.
  
     0.543
KRK40850.1
Hypothetical protein.
       0.524
KRK40846.1
Hypothetical protein.
       0.517
KRK40847.1
Hypothetical protein.
       0.517
KRK34391.1
PBSX family phage terminase.
  
     0.486
KRK40829.1
Bacteriophage antirepressor.
 
     0.412
Your Current Organism:
Lactobacillus bifermentans
NCBI taxonomy Id: 1423726
Other names: L. bifermentans DSM 20003, Lactobacillus bifermentans DSM 20003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.