STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK38969.1Iron sulfur ABC transporter. (433 aa)    
Predicted Functional Partners:
KRK38970.1
ABC transporter ATP-binding component.
 
 0.998
KRK38968.1
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.990
KRK38967.1
NifU family protein.
 
  
 0.980
KRK38966.1
Iron sulfur ABC transporter.
 
  
0.962
KRK39615.1
sufB protein.
 
  
0.801
KRK32839.1
Cysteine desulfurase family protein.
 
 
 0.792
KRK33569.1
Selenium-dependent molybdenum hydroxylase system protein, YqeB family.
  
 
 0.769
KRK40335.1
Hypothetical protein.
 
   
 0.434
KRK39795.1
Metal-sulfur cluster biosynthetic protein.
 
   
 0.417
Your Current Organism:
Lactobacillus bifermentans
NCBI taxonomy Id: 1423726
Other names: L. bifermentans DSM 20003, Lactobacillus bifermentans DSM 20003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.