STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK39131.1Glycosyltransferase. (238 aa)    
Predicted Functional Partners:
KRK33325.1
Oxidoreductase.
  
  
  0.810
KRK40204.1
Glycosyltransferase.
 
     0.739
KRK39130.1
Hypothetical protein.
       0.709
KRK39127.1
N-acetylglucosaminyltransferase.
  
 
  0.596
KRK39128.1
Hypothetical protein.
       0.558
KRK39129.1
Hypothetical protein.
       0.558
KRK39234.1
Hypothetical protein.
 
 
  0.458
KRK33326.1
GDP dissociation inhibitor.
 
  
  0.452
KRK39231.1
Hypothetical protein.
 
 
 0.452
KRK39125.1
GGDEF domain-containing protein.
       0.451
Your Current Organism:
Lactobacillus bifermentans
NCBI taxonomy Id: 1423726
Other names: L. bifermentans DSM 20003, Lactobacillus bifermentans DSM 20003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.