STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK36413.1Histidine kinase. (592 aa)    
Predicted Functional Partners:
KRK36414.1
Two-component system, LytT family, response regulator LytT.
 0.997
KRK34517.1
LytTr family transcriptional regulator.
 
 0.955
KRK36415.1
Effector of murein hydrolase LrgA.
 
   
 0.881
KRK36416.1
Holin protein LrgB.
 
   
 0.862
KRK39085.1
Hypothetical protein.
  
 0.760
KRK40574.1
Hypothetical protein.
  
  
  0.509
KRK36412.1
Major facilitator superfamily protein.
       0.429
Your Current Organism:
Lactobacillus bifermentans
NCBI taxonomy Id: 1423726
Other names: L. bifermentans DSM 20003, Lactobacillus bifermentans DSM 20003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.