STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK36420.1Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (299 aa)    
Predicted Functional Partners:
KRK34284.1
Transcription regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.613
KRK35094.1
Hypothetical protein; Belongs to the LysR transcriptional regulatory family.
  
     0.606
KRK33714.1
Malolactic regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.552
KRK36421.1
Hypothetical protein; Belongs to the peptidase S26 family.
  
    0.542
KRK32565.1
Hypothetical protein; Belongs to the LysR transcriptional regulatory family.
  
     0.509
ddl-2
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
       0.495
KRK40706.1
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.489
KRK39234.1
Hypothetical protein.
  
     0.433
KRK40634.1
Glutamate synthase large subunit.
  
  
 0.408
KRK34642.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.406
Your Current Organism:
Lactobacillus bifermentans
NCBI taxonomy Id: 1423726
Other names: L. bifermentans DSM 20003, Lactobacillus bifermentans DSM 20003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.