STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK40681.1Transcription regulator. (228 aa)    
Predicted Functional Partners:
KRK40634.1
Glutamate synthase large subunit.
    
 0.936
KRK33571.1
Pyruvate flavodoxin ferredoxin oxidoreductase family protein.
  
 
 0.925
KRK34235.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.833
KRK36367.1
Hypothetical protein.
 
    0.819
KRK33566.1
Aldehyde oxidoreductase.
    
 0.803
murI
Hypothetical protein; Provides the (R)-glutamate required for cell wall biosynthesis.
    
  0.794
KRK40680.1
Short-chain alcohol dehydrogenase.
   
  0.787
KRK36368.1
Stress induced DNA binding protein; Belongs to the Dps family.
 
    0.776
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.721
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.712
Your Current Organism:
Lactobacillus bifermentans
NCBI taxonomy Id: 1423726
Other names: L. bifermentans DSM 20003, Lactobacillus bifermentans DSM 20003
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