STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM72328.1Hypothetical protein. (129 aa)    
Predicted Functional Partners:
KRM72060.1
Hypothetical protein.
  
     0.765
KRM71635.1
Hypothetical protein.
  
     0.759
KRM72019.1
Hypothetical protein.
  
     0.751
KRM72436.1
Hypothetical protein.
  
     0.745
KRM72061.1
Hypothetical protein.
  
     0.725
KRM71496.1
Hypothetical protein.
  
     0.715
KRM72326.1
rRNA methylase (SpoU class); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
       0.711
KRM73111.1
Hypothetical protein.
  
     0.669
KRM71570.1
Glycerophosphoryl diester phosphodiesterase.
  
     0.652
KRM72327.1
DNA topoisomerase III.
       0.635
Your Current Organism:
Lactobacillus brantae
NCBI taxonomy Id: 1423727
Other names: L. brantae DSM 23927, Lactobacillus brantae DSM 23927, Lactobacillus brantae SL1108, Lactobacillus sp. SL1108
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.