STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM72464.1ABC transporter ATPase. (254 aa)    
Predicted Functional Partners:
KRM72465.1
Antimicrobial peptide ABC transporter permease.
 0.987
KRM72210.1
Abc transporter permease.
 0.971
KRM72070.1
ABC-type antimicrobial peptide transport system protein.
 
0.873
KRM71710.1
ABC superfamily ATP binding cassette transporter, membrane protein.
 
 0.846
KRM72462.1
Signal transduction histidine kinase.
 
   
 0.844
KRM72463.1
Two-component response regulator.
 
   
 0.835
KRM72683.1
ABC transporter related protein.
 
0.820
KRM72154.1
Peptide ABC transporter permease.
  
 0.811
KRM71992.1
ABC transporter-like protein.
  
0.804
KRM72090.1
ABC-type multidrug transport system, ATPase component.
  
0.787
Your Current Organism:
Lactobacillus brantae
NCBI taxonomy Id: 1423727
Other names: L. brantae DSM 23927, Lactobacillus brantae DSM 23927, Lactobacillus brantae SL1108, Lactobacillus sp. SL1108
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.