STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM92076.1Cell surface hydrolase. (266 aa)    
Predicted Functional Partners:
KRM90936.1
Cell surface hydrolase.
  
     0.669
KRM92101.1
Hypothetical protein.
  
     0.557
KRM92663.1
Hypothetical protein.
  
     0.529
cshA
ATP-dependent RNA helicase; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily.
   
  
 0.499
KRM92029.1
DNA-binding response regulator.
      
 0.489
KRM92030.1
ppGpp synthetase hydrolase catalytic subunit.
      
 0.489
KRM90942.1
Transcription regulator.
  
     0.475
KRM92028.1
Sensor histidine kinase.
      
 0.469
KRM90273.1
Protein dltD precursor.
  
     0.456
KRM92075.1
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.454
Your Current Organism:
Lactobacillus cacaonum
NCBI taxonomy Id: 1423729
Other names: L. cacaonum DSM 21116, Lactobacillus cacaonum DSM 21116
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