STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM92630.1Capsular biosynthesis protein. (237 aa)    
Predicted Functional Partners:
KRM92629.1
UDP-galactopyranose mutase.
 
  
 0.968
KRM92822.1
Oligosaccharide translocase.
 
  
 0.911
KRM92628.1
Hypothetical protein.
 
 
  0.899
KRM92631.1
Priming glycosyl transferase.
 
   
 0.775
KRM91964.1
Beta-1,6-galactofuranosyltransferase.
 
 
  0.700
KRM92821.1
Beta-1,6-galactofuranosyltransferase.
 
 
  0.694
KRM90922.1
Hypothetical protein.
 
 
  0.689
KRM91131.1
Undecaprenyl-phosphate galactose phosphotransferase.
 
   
 0.611
KRM91121.1
Phosphotyrosine-protein phosphatase.
     
 0.539
KRM91122.1
Tyrosine-protein kinase.
     
 0.512
Your Current Organism:
Lactobacillus cacaonum
NCBI taxonomy Id: 1423729
Other names: L. cacaonum DSM 21116, Lactobacillus cacaonum DSM 21116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.