KRN25247.1 protein (Lactobacillus camelliae)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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white nodes:
second shell of interactors

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filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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[Homology]

Score

KRN25247.1

Bacteriophage DNA packaging protein. (97 aa)

Predicted Functional Partners:

KRN25245.1

0.924

KRN25246.1

0.907

KRN23334.1

0.779

KRN18692.1

0.722

KRN25894.1

0.722

KRN21086.1

0.722

KRN19142.1

0.709

KRN19144.1

0.709

KRN24150.1

0.709

KRN21550.1

0.709

Your Current Organism:

Lactobacillus camelliae

NCBI taxonomy Id: 1423730
Other names: L. camelliae DSM 22697 = JCM 13995, Lactobacillus camelliae DSM 22697, Lactobacillus camelliae DSM 22697 = JCM 13995, Lactobacillus camelliae JCM 13995, Lactobacillus camelliae JCM 13995 = DSM 22697

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRN18692.1	KRN19142.1	FC75_GL000460	FC75_GL000243	Hypothetical protein.	Hypothetical protein.	0.710
KRN18692.1	KRN19144.1	FC75_GL000460	FC75_GL000245	Hypothetical protein.	Hypothetical protein.	0.710
KRN18692.1	KRN21550.1	FC75_GL000460	FC75_GL002182	Hypothetical protein.	Hypothetical protein.	0.710
KRN18692.1	KRN23334.1	FC75_GL000460	FC75_GL001534	Hypothetical protein.	Hypothetical protein.	0.874
KRN18692.1	KRN24150.1	FC75_GL000460	FC75_GL001328	Hypothetical protein.	Hypothetical protein.	0.710
KRN18692.1	KRN25247.1	FC75_GL000460	FC75_GL000802	Hypothetical protein.	Bacteriophage DNA packaging protein.	0.722
KRN19142.1	KRN18692.1	FC75_GL000243	FC75_GL000460	Hypothetical protein.	Hypothetical protein.	0.710
KRN19142.1	KRN21086.1	FC75_GL000243	FC75_GL002428	Hypothetical protein.	Hypothetical protein.	0.791
KRN19142.1	KRN23334.1	FC75_GL000243	FC75_GL001534	Hypothetical protein.	Hypothetical protein.	0.725
KRN19142.1	KRN25247.1	FC75_GL000243	FC75_GL000802	Hypothetical protein.	Bacteriophage DNA packaging protein.	0.709
KRN19142.1	KRN25894.1	FC75_GL000243	FC75_GL002027	Hypothetical protein.	Hypothetical protein.	0.710
KRN19144.1	KRN18692.1	FC75_GL000245	FC75_GL000460	Hypothetical protein.	Hypothetical protein.	0.710
KRN19144.1	KRN21086.1	FC75_GL000245	FC75_GL002428	Hypothetical protein.	Hypothetical protein.	0.710
KRN19144.1	KRN23334.1	FC75_GL000245	FC75_GL001534	Hypothetical protein.	Hypothetical protein.	0.758
KRN19144.1	KRN25247.1	FC75_GL000245	FC75_GL000802	Hypothetical protein.	Bacteriophage DNA packaging protein.	0.709
KRN19144.1	KRN25894.1	FC75_GL000245	FC75_GL002027	Hypothetical protein.	Hypothetical protein.	0.710
KRN21086.1	KRN19142.1	FC75_GL002428	FC75_GL000243	Hypothetical protein.	Hypothetical protein.	0.791
KRN21086.1	KRN19144.1	FC75_GL002428	FC75_GL000245	Hypothetical protein.	Hypothetical protein.	0.710
KRN21086.1	KRN21550.1	FC75_GL002428	FC75_GL002182	Hypothetical protein.	Hypothetical protein.	0.710
KRN21086.1	KRN23334.1	FC75_GL002428	FC75_GL001534	Hypothetical protein.	Hypothetical protein.	0.874

page 1 of 4

Network Stats

number of nodes:

5

number of edges:

9

average node degree:

3.6

avg. local clustering coefficient:

0.9

expected number of edges:

4

PPI enrichment p-value:

0.0189

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0055086

Nucleobase-containing small molecule metabolic process

6 of 198

1.43

1.51

0.00010

GO:0009117

Nucleotide metabolic process

5 of 149

1.48

1.33

0.00063

GO:0072524

Pyridine-containing compound metabolic process

3 of 32

1.93

1.23

0.0038

GO:0019637

Organophosphate metabolic process

6 of 345

1.19

1.07

0.00063

GO:0009113

Purine nucleobase biosynthetic process

2 of 7

2.41

1.05

0.0116

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0008177

Succinate dehydrogenase (ubiquinone) activity

2 of 3

2.78

0.99

0.0165

GO:0000166

Nucleotide binding

7 of 1050

0.78

0.5

0.0165

GO:0043167

Ion binding

9 of 2006

0.61

0.41

0.0165

GO:0003824

Catalytic activity

10 of 3415

0.42

0.29

0.0341

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005737

Cytoplasm

11 of 3920

0.4

0.28

0.0326

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:10713

De novo IMP biosynthetic process, and Tetrahydrofolate interconversion

3 of 15

2.25

1.74

0.00050

CL:10660

Nucleoside monophosphate metabolic process, and One carbon pool by folate

4 of 48

1.87

1.68

0.00034

CL:9614

Fumarate reductase complex, and 3Fe-4S

2 of 5

2.56

1.21

0.0061

CL:7135

Aldehyde biosynthetic process

2 of 6

2.48

1.21

0.0061

CL:10716

De novo IMP biosynthetic process

2 of 5

2.56

1.21

0.0061

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00230

Purine metabolism

4 of 102

1.55

1.39

0.00058

map00020

Citrate cycle (TCA cycle)

2 of 36

1.7

0.76

0.0315

map01110

Biosynthesis of secondary metabolites

5 of 652

0.84

0.49

0.0315

map01100

Metabolic pathways

8 of 2203

0.51

0.33

0.0315

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-196849

Metabolism of water-soluble vitamins and cofactors

4 of 84

1.63

1.38

0.00087

MAP-197264

Nicotinamide salvaging

2 of 5

2.56

1.23

0.0056

MAP-196854

Metabolism of vitamins and cofactors

4 of 112

1.51

1.2

0.0018

MAP-15869

Metabolism of nucleotides

3 of 69

1.59

0.94

0.0111

MAP-73817

Purine ribonucleoside monophosphate biosynthesis

2 of 13

2.14

0.93

0.0185

(more ...)

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF03853

YjeF-related protein N-terminus

2 of 2

2.95

1.22

0.0063

PF02769

AIR synthase related protein, C-terminal domain

2 of 2

2.95

1.22

0.0063

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR036921

PurM-like, N-terminal domain superfamily

2 of 2

2.95

0.97

0.0181

IPR036676

PurM-like, C-terminal domain superfamily

2 of 2

2.95

0.97

0.0181

IPR036652

YjeF N-terminal domain superfamily

2 of 2

2.95

0.97

0.0181

IPR010918

PurM-like, C-terminal domain

2 of 2

2.95

0.97

0.0181

IPR004443

YjeF N-terminal domain

2 of 2

2.95

0.97

0.0181

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