STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM31098.1Sucrose operon repressor ScrR, LacI family protein. (325 aa)    
Predicted Functional Partners:
KRM33525.1
Sucrose PTS, EIIBCA.
 
  
 0.801
KRM32475.1
lacI family transcriptional regulator.
  
   
 0.790
KRM33412.1
Transcription regulator.
  
   
 0.762
KRM31851.1
PTS system, trehalose-specific IIBC component.
    
 0.756
KRM31852.1
PTS system sugar-specific transporter subunit EIIA.
    
 0.756
KRM30930.1
Beta-glucosides pts, eiibca.
    
 0.756
KRM31099.1
Glycerophosphodiester phosphodiesterase.
       0.741
KRM31096.1
Sucrose-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
 
 0.732
KRM36625.1
Glutamate synthase large subunit.
    
 
 0.694
KRM31476.1
Hypothetical protein.
   
 
 0.639
Your Current Organism:
Lactobacillus composti
NCBI taxonomy Id: 1423734
Other names: L. composti DSM 18527 = JCM 14202, Lactobacillus composti DSM 18527, Lactobacillus composti DSM 18527 = JCM 14202, Lactobacillus composti JCM 14202, Lactobacillus composti JCM 14202 = DSM 18527
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