STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM35082.1Hypothetical protein. (462 aa)    
Predicted Functional Partners:
KRM35083.1
Heme peroxidase.
 
     0.865
hemH-2
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
 
     0.826
KRM36281.1
Hypothetical protein.
  
     0.763
KRM36125.1
Major facilitator transporter.
  
     0.751
KRM30386.1
Drug resistance transporter, Bcr CflA subfamily.
  
     0.469
KRM35084.1
dapC protein.
       0.411
KRM35080.1
ATPase chaperone ClpL, probable specificity factor for ClpP protease; Belongs to the ClpA/ClpB family.
       0.404
KRM31568.1
Hypothetical protein.
   
 
 0.403
Your Current Organism:
Lactobacillus composti
NCBI taxonomy Id: 1423734
Other names: L. composti DSM 18527 = JCM 14202, Lactobacillus composti DSM 18527, Lactobacillus composti DSM 18527 = JCM 14202, Lactobacillus composti JCM 14202, Lactobacillus composti JCM 14202 = DSM 18527
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