STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM30673.1Aliphatic sulfonate ABC transporter substrate-binding protein. (340 aa)    
Predicted Functional Partners:
KRM30670.1
Binding-protein-dependent transport system inner membrane protein.
 
 0.993
KRM30669.1
ABC transporter ATP-binding protein.
 
 0.977
KRM30676.1
Hypothetical protein.
 
     0.869
KRM33557.1
ABC-type nitrate sulfonate bicarbonate transport system, permease component.
 
 
 0.868
KRM30675.1
Hypothetical protein.
 
     0.852
KRM33559.1
Peptide ABC transporter ATPase.
 
 0.842
KRM30677.1
Amidohydrolase.
 
     0.797
KRM30667.1
RpiR family transcriptional regulator.
 
     0.796
hutI
Imidazolonepropionase.
 
     0.721
KRM30672.1
Urocanate hydratase.
 
     0.716
Your Current Organism:
Lactobacillus composti
NCBI taxonomy Id: 1423734
Other names: L. composti DSM 18527 = JCM 14202, Lactobacillus composti DSM 18527, Lactobacillus composti DSM 18527 = JCM 14202, Lactobacillus composti JCM 14202, Lactobacillus composti JCM 14202 = DSM 18527
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